Anne Denton's Publications

2012

• Ajay Kumar, Kristin Simons, Muhammad J. Iqbal, Monika M. de Jiménez, Filippo M Bassi, Farhad Ghavami, Omar Al-Azzam, Thomas Drader, Yi Wang, Ming-Cheng Luo, Yong Q. Gu, Anne Denton, Gerard R Lazo, Steven S Xu, Jan Dvorak, Penny M.A. Kianian and Shahryar F. Kianian, "Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii," BMC Genomics, 13:597, 2012. (online access)
  
• Ajay Kumar, Filippo M. Bassi, Etienne Paux, Omar Al-Azzam, Monika M. de Jimenez, Anne M. Denton, Yong Q. Gu, Eric Huttner, Andrzej Kilian, Sachin Kumar, Aakash Goyal, Muhammad J. Iqbal, Vijay K. Tiwari, Munevver Dogramaci, Harindra S. Balyan, Harcharan S. Dhaliwal, Pushpendra K. Gupta, Gursharn S. Randhawa, Catherine Feuillet, Wojciech P. Pawlowski, and Shahryar F. Kianian, "DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum," BMC Genomics, 13:339, 2012. (online access)
  
• Javier A. Delgado, Omar Al-Azzam, Anne M. Denton, Samuel G. Markell, and Rubella S. Goswami, "A resource for in silico identification of fungal polyketide synthases from predicted fungal proteomes," Molecular Plant Pathology 13(5):494-507, 2012. (online access)
  

2011

• Omar Al-Azzam, Loai Alnemer, Charith Chitraranjan, Anne M. Denton, Ajay Kumar, Filippo Bassi, Muhammad J. Iqbal and Shahryar F. Kianian, "Network-based Filtering of Unreliable Markers in Radiation Hybrid Mapping," International Conference on Machine Learning and Applications (ICMLA 2011), Honolulu HI, 18-21 Dec. 2011. (online access)
  
• Loai M. Alnemer, Omar Al-Azzam, Charith Chitraranjan, Anne M. Denton, Filippo M. Bassi, Muhammad J. Iqbal, and Shahryar F. Kianian, "Multiple sources classification of gene position on chromosomes using statistical significance of individual classification results," International Conference on Machine Learning and Applications (ICMLA 2011), Honolulu HI, 18-21 Dec. 2011. (online access)
  
• Charith D. Chitraranjan, Loai Alnemer, Omar Al-Azzam, Saeed Salem, Anne M. Denton, and Shahryar F. Kianian, "Frequent Substring-Based Sequence Classification with an Ensemble of Support Vector Machines Trained using Reduced Amino Acid Alphabets," ICMLA 2011 Special Session on Machine Learning in Bioinformatics and Computational Biology, Honolulu HI, 18-21 Dec. 2011. (online access)
  
• Ryan Carlson, Hyunsook Do, and Anne Denton, "A Clustering Approach to Improving Test Case Prioritization: An Industrial Case Study," in Proc. 27th IEEE International Conference on Software Maintenance (ICSM), Williamsburg VA, 25-30 Sept. 2011.
  
• Christopher A. Besemann, Jianfei Wu, and Anne M. Denton, "A Log-Linear Approach to Mining Significant Graph-Relational Patterns" Data and Knowledge Engineering, 70(6):527-554, 2011. (online access)
  
• Omar Al-Azzam, Jianfei Wu, Loai Al-Nimer, Charith Chitraranjan, Anne Denton, "A weighted density-based approach for identifying standardized items that are significantly related to the biological literature," Text Mining Workshop in conjunction with the Eleventh SIAM International Conference on Data Mining, Mesa AZ, 30 April 2011. (online access)
  

2010

• Jianfei Wu, Loai Al Nimer, Omar Al Azzam, Charith Chitraranjan, Saeed Salem, Anne M. Denton, "Sequential Data Clustering," In Proc. 10th International Conference on Machine Learning and Applications (ICMLA 2010), pp. 1015-1020, Washington DC, 12-14 Dec. 2010. (online access)
• Loai M. Alnemer, Jianfei Wu, Omar Al-Azzam, and Anne M. Denton, "A density-based algorithm for evaluating the statistical significance of individual classification results," in Proc. 16th ACM SIGKDD Conf. on Knowledge Discovery and Data Mining: BIOKDD Workshop, Washington DC, 25-28 July 2010.
  
• Anne M. Denton, Jianfei Wu, and Dietmar H. Dorr, "Point-distribution algorithm for mining vector-item patterns," in Proc. 16th ACM SIGKDD Conf. on Knowledge Discovery and Data Mining: Useful Patterns Workshop, Washington DC, 25-28 July 2010. (online access)
• Birgit M. Prüß, Karan Verma, Priyankar Samanta, Preeti Sule, Sunil Kumar, Jianfei Wu, David Christianson, Shelley M. Horne, Shane J. Stafslien, Alan J. Wolfe, and Anne Denton, "Environmental and genetic factors that contribute to  Escherichia coli K-12 biofilm formation," Arch. Microbiol. 192:715-728, 2010. (online access)
  
• Dietmar H. Dorr, Anne M. Denton, "Generalised sequence signatures through symbolic clustering," International Journal of Data Mining and Bioinformatics, 4(6):656–674, 2010.
  

2009

• Jianfei Wu, Anne M. Denton, Omar El-Ariss, and Dianxiang Xu, "Mining core patterns in stock market data," Mining Multiple Information Sources Workshop in conjunction with the 2009 IEEE International Conference on Data Mining, Miami, Dec 6, 2009.
• Anne M. Denton and Jianfei Wu, “Data mining of vector-item patterns using neighborhood histograms,” Knowledge and Information Systems (KAIS) journal, 21:173-199, 2009. (online access)
• Dietmar H. Dorr, Anne M. Denton, "Clustering sequences by overlap," International Journal of Data Mining and Bioinformatics, 3(3):260-279, 2009. (online access)
  
• Dietmar H. Dorr and Anne M. Denton, “Establishing relationships among patterns in stock market data,” Data & Knowledge Engineering, 68(3):318-337, March 2009. (online access)
  
• Anne Denton, "Subspace sums for extracting non-random data from massive noise," Knowledge and Information Systems (KAIS) journal 20(1):35-62, July 2009. (online access)
  
• Anne M. Denton, Christopher A. Besemann and Dietmar H. Dorr, "Pattern-based time-series subsequence clustering using radial distribution functions," Knowledge and Information Systems (KAIS) journal, 18(1):1-27, January 2009. (online access)
• Anne Denton, "Clustering of time series data," in Encyclopedia of Data Warehousing and Mining 2nd Edition, pp. 172-175, ed. John Wang, Idea Group Publishing, Hershey, PA, 2009.
  
• Anne Denton and Christopher Besemann, "Association rule mining of relational data, " in Encyclopedia of Data Warehousing and Mining 2nd Edition, pp. 70-73, ed. John Wang, Idea Group Publishing, Hershey, PA, 2009.

2008

• Anne M. Denton, Jianfei Wu, Megan K. Townsend, Preeti Sule, and Birgit M. Prüß,“Relating gene expression data on two-component systems to functional annotations in Escherichia coli,” BMC Bioinformatics, 9:294, 2008. (online access)
  
• Dietmar Dorr and Anne Denton, "A pattern mining approach toward discovering generalized sequence signatures," In Proc. SIAM International Conference on Data Mining (SDM08), Atlanta, GA, pp. 353-362, April 24-26, 2008. (online access)

2007

• Kenneth Lepper, Steven L. Reneau, Jennifer Thorstad, Anne Denton, "OSL dating of a lacustrine to fluvial transitional sediment sequence in Valle Toledo, Valles caldera, New Mexico," New Mexico Geology, 29(4), 112-116, 2007. (online access)
  
• Dietmar Dorr and Anne Denton, "Generalized sequence signatures through symbolic clustering," Workshop on Machine Learning in Biomedicine and Bioinformatics in conjunction with the Sixth International Conference on Machine Learning and Applications, Cincinnati, OH, Dec. 13-15, 2007. (online access)
  
• Jianfei Wu and Anne Denton, " Mining vector-item patterns for annotating protein domains," Mining Multiple Information Sources Workshop in conjunction with the ACM KDD '07 Conference on Knowledge Discovery and Data Mining, San Jose, CA, Aug. 12, 2007, ISBN: 978-1-59593-840-4. (online access)
• Anne Denton and Angshu Kar, "Finding differentially expressed genes through noise elimination," Workshop on Data Mining for Biomedical Informatics in conjunction with the Sixth SIAM International Conference on Data Mining, Minneapolis, MN, April 28, 2007. (pdf)
• Christopher Besemann and Anne Denton, "Mining edge-disjoint patterns in graph-relational data," Workshop on Data Mining for Biomedical Informatics in conjunction with the Sixth SIAM International Conference on Data Mining, Minneapolis, MN, April 28, 2007. (pdf)
  

2006

• Christopher Besemann, Anne Denton, Nathan J Carr and Birgit M Pruess, "BISON: bio-interface for the semi-global analysis of network patterns," Source Code for Biology and Medicine, 1:8, 2006. (online access)
• Birgit M. Prüβ, Christopher  Besemann, Anne Denton, and Alan J. Wolfe,  "A complex transcription network controls the early stages of biofilm formation," J. Bacteriol. 188:3731-3739, 2006. 
• Imad Rahal, Dongmei Ren, Weihua Wu, Anne Denton, Christopher Besemann, and William Perrizo, “Exploiting edge semantics in citation graphs using efficient, vertical ARM,”  Knowledge And Information Systems (KAIS) Journal, 10(1):57-91, Springer-Verlag London, 2006. (online access)
• William Perrizo, Qin Ding, Maleq Kahn, Qiang Ding, and Anne Denton, “An efficient weighted nearest neighbour classifier using vertical data representation,”  International Journal of Business Intelligence and Data Mining 2(1):64-78, 2006. (online access)
• Christopher Besemann, Anne Denton, Ajay Yekkirala, Ron Hutchison, and Marc Anderson, "Understanding annotations in protein interaction networks", in Advanced Data Mining Technologies in Bioinformatics, ed. Hui-Huang Hsu, Idea Group Publishing, Hershey, PA, 2006.
  

2005

• Anne Denton, "Kernel-density-based clustering of time series subsequences using a continuous random-walk noise model," In Proceedings The Fifth IEEE International Conference on Data Mining (ICDM'05), Houston, Texas, Nov. 27-30, 2005. (online access)
  
• Christopher Besemann and Anne Denton, "Integration of profile hidden Markov model output into association rule mining," In Proceedings The 11th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD), Chickago, IL, Aug. 21-24, 2005. (online access)
  
• Anne Denton, "Clustering of time series data," in Encyclopedia of Data Warehousing and Mining, ed. John Wang, Idea Group Publishing, Hershey, PA, 2005.
  
• Anne Denton and Christopher Besemann, "Association rule mining of relational data, " in Encyclopedia of Data Warehousing and Mining, ed. John Wang, Idea Group Publishing, Hershey, PA, 2005.

2004

• Sisir Ray, Anne Denton, Christopher Besemann, and Kendall E. Nygard, "Learning theory and styles in online computer science courses," 2004 WSEAS Int. Conf. on Engineering Education, EE'04, Venice, Italy, Nov. 2004. Also:  Advances in Engineering Education, 2005 .
• Anne Denton, "Density-based clustering of time series subsequences," The Third Workshop on Mining Temporal and Sequential Data (TDM 04) in conjunction with The Tenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Seattle, WA, Aug. 22, 2004. (pdf)
  
• Christopher Besemann, Anne Denton, Ajay Yekkirala, Ron Hutchison, and Marc Anderson, "Differential association rule mining for the study of protein-protein interaction networks,"  The Fourth Workshop on Data Mining in Bioinformatics (BIOKDD 04) in conjunction with the Tenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Seattle, WA, Aug. 22, 2004. (pdf)
  
• Anne Denton and William Perrizo, "A kernel-based semi-naive Bayesian classifier using P-trees," In Proceedings 2004 SIAM Int. Conf. on Data Mining (SDM’04), Lake Buena Vista, FL, April 2004. (pdf)
• Anne Denton and William Perrizo, "Decision tree induction for dynamic high-dimensional data using P-trees," In Proceedings 19th Int. Conf. on Computers and Their Applications (CATA’04), Seattle, WA, March 2004. (pdf)

2003

• Anne Denton and Paul Juell, "Visualization of content information in networks using GlyphNet," In Proceedings Third International Workshop on Visual Data Mining in conjunction with The Third IEEE International Conference on Data Mining (VDM@ICDM2003), Melbourne, FL,  November 19, 2003. 
• Paul Juell, Vijayakumar Shanmugasundaram, and Anne Denton, "Effectiveness of visualization for student use," In Proceedings World Conference on Educational Multimedia, Hypermedia and Telecommunications (ED-MEDIA'03), Honolulu, Hawaii, USA, June 21-26, 2003. (doc)
• William Perrizo and Anne Denton, "Framework unifying association rule mining, clustering, and classification,"  In Proceedings CSITeA conference, Rio de Janeiro, Brazil, June 5-7, 2003. (pdf)
• William Perrizo, Qin Ding, Anne Denton, Kirk Scott, Qiang Ding, and Maleq Khan, "PINE - Podium incremental neighbor evaluator for spatial data using P-trees," In Proceedings Symposium on Applied Computing (SAC'03), Melbourne, Florida, USA, 2003. (online access)
• Amal Perera, Anne Denton, Pratap Kotala, William Jockheck, Willy Valdivia Granda, and William Perrizo "P-tree classification of yeast gene deletion data." SIGKDD Explorations, Vol. 4, Issue 2, January 2003. (online access)

2002

• Anne Denton, Qiang Ding, William Perrizo, and Qin Ding, "Efficient hierarchical clustering of large data sets using P-trees," In Proceedings 15th International Conference on Computer Applications in Industry and Engineering (CAINE'02), San Diego, California, USA, 2002. (pdf )
• William Perrizo, Qin Ding, and Anne Denton, "Lazy classifiers using P-trees." In Proceedings 15th International Conference on Computer Applications in Industry and Engineering (CAINE'02), San Diego, California, USA, 2002. (pdf)

Physics Publications

• Anne Denton and Hartmut Löwen, "Effective interaction and density profiles of confined charged colloids," Thin Solid Films, 330, 7-13, 1998.
• Anne Bohle (now Anne Denton), Robert Holyst, and Thomas Vilgis, "Polydispersity and ordered phases in solutions of rod-like macromolecules," Phys. Rev. Lett.,  76, 1396, 1996. ( e-print arxive version )